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Concordia University
Montréal, Canada

Publications from the Semantic Software Lab

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A
Angius, E., and R. Witte, "OpenTrace: an Open Source Workbench for Automatic Software Traceability Link Recovery", 19th Working Conference on Reverse Engineering (WCRE 2012), Kingston, Ontario, Canada : IEEE Computer Society, pp. 507–508, October 15-18, 2012. Abstract  Download: WCRE2012-OpenTrace.pdf (227.65 KB)
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Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "Personalized Semantic Assistance for the Curation of Biochemical Literature", IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), Philadelphia, PA, USA : IEEE, 10/2012. Abstract  Download: Bakalov_BIBM2012.pdf (348.96 KB)
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "Empowering web portal users with personalized text mining services", NETTAB 2012, vol. 18 (Supplement B), Como, Italy : EMBnet.journal, pp. 81--83, 11/2012. Abstract  Download: 558-3133-2-PB.pdf (426.25 KB); Bakalov_NETTAB2012poster.pdf (927.73 KB)
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "An Approach to Controlling User Models and Personalization Effects in Recommender Systems", International Conference on Intelligent User Interfaces (IUI '13), Santa Monica, CA, USA : ACM, pp. 49–56, 03/2013. Abstract  Download: iui13.pdf (420.74 KB)
Bakalov, F., B. Sateli, R. Witte, M. - J. Meurs, and B. König-Ries, "Natural Language Processing for Semantic Assistance in Web Portals", IEEE International Conference on Semantic Computing (ICSC 2012), Palermo, Italy : IEEE, 09/2012 . Abstract  Download: Bakalov_ICSC2012.pdf (726.36 KB)
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004. Abstract  Download: baker_witte_cccb04.pdf (272.1 KB)
Baker, C. J. O., and R. Witte, "Mutation mining–A prospector's tale", Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006. Abstract
Baker, C. J. O., R. Witte, A. Shaban-Nejad, G. Butler, and V. Haarslev, "The FungalWeb Ontology: Application Scenarios", Eighth Annual Bio-Ontologies Meeting, Detroit, Michigan, USA, pp. 1–2, June 24, 2005. Abstract  Download: Baker-etal-8th-Bio-Ontologies-Abstract.pdf (30.2 KB)
Baker, C. J. O., A. Shaban-Nejad, R. Witte, V. Haarslev, and G. Butler, "Empowering the Enzyme Biotechnologist with Ontologies", 10th International Congress on Biotechnology in the Pulp and Paper Industry (ICBPPI 2007), Monona Terrace, Madison, Wisconsin, USA, June 10–14, 2007. Abstract  Download: ICBPPI2007-poster.png (570.97 KB)
Baker, C. J. O., and R. Witte, "Mutation Miner", 13th Annual International conference on Intelligent Systems for Molecular Biology (ISMB 2005), Detroit, Michigan, USA, June 25–29, 2005. Abstract  Download: ISMB2005-poster.png (411.18 KB)
Baker, C. J. O., and R. Witte, "Mutation Miner – Textual Annotation of Protein Structures", 5th CERMM Annual Symposium, Concordia University, Montréal, Québec, Canada : Centre for Research in Molecular Modeling, pp. 29, February 11–13, 2005. Abstract  Download: cermm-abstracts-2005.pdf (564.91 KB)
Baker, C. J. O., R. Witte, A. B. Gurpur, and V. Ryzhikov, "Mutation Miner", 5th International Conference of the Canadian Proteomics Initiative (CPI 2005), Toronto, Ontario, Canada, May 13–14, 2005. Abstract  Download: CPI2005-poster.png (397.65 KB)
Bellemare, S., S. Bergler, and R. Witte, "ERSS at TAC 2008", Proceedings of the First Text Analysis Conference (TAC 2008), Gaithersburg, Maryland, USA : National Institute of Standards and Technology (NIST), November 17--19, 2008. Abstract  Download: CLaC.proceedings.pdf (304.9 KB)
Bergler, S., R. Witte, M. Khalife, Z. Li, and F. Rudzicz, "Using Knowledge-poor Coreference Resolution for Text Summarization", Workshop on Text Summarization, Edmonton, Canada : NIST, May 31–June 1, 2003. Abstract  Download: concordia.final_.pdf (118.77 KB)
Qu, Y., J. Shanahan, and J. Wiebe (Eds.), Bergler, S., M. Doandes, C. Gerard, and R. Witte, "Attributions", Exploring Attitude and Affect in Text: Theories and Applications, Stanford, California, USA : AAAI Press, pp. 16–19, March 22–25, 2004. Abstract  Download: SS04-07-004.pdf (46.85 KB)
Bergler, S., R. Witte, Z. Li, M. Khalife, Y. Chen, M. Doandes, and A. Andreevskaia, "Multi-ERSS and ERSS 2004", Proceedings of Document Understanding Workshop (DUC 2004), Boston Park Plaza Hotel and Towers, Boston, USA : NIST, May 6–7, 2004. Abstract  Download: concordia.witte_.pdf (79.8 KB)
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Gitzinger, T., and R. Witte, "Enhancing the OpenOffice.org Word Processor with Natural Language Processing Capabilities", Natural Language Processing resources, algorithms and tools for authoring aids, Marrakech, Morocco, June 1, 2008. Abstract  Download: ooassist.pdf (545.53 KB)
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Hopfe, C. J., Y. Rezgui, E. Métais, A. D. Preece, and H. Li (Eds.), Khamis, N., R. Witte, and J. Rilling, "Automatic Quality Assessment of Source Code Comments: The JavadocMiner", 15th International Conference on Applications of Natural Language to Information Systems (NLDB 2010), vol. 6177/2010, Cardiff, UK : Springer, pp. 68--79, June 23--25, 2010. Abstract  Download: nldb2010-javadocminer.pdf (351.25 KB)
Khamis, N., R. Witte, and J. Rilling, "Generating an NLP Corpus from Java Source Code: The SSL Javadoc Doclet", New Challenges for NLP Frameworks, Valletta, Malta : ELRA, pp. 41–45, May 22, 2010. Abstract  Download: nlpf2010-ssldoclet.pdf (436.13 KB)
Kölsch, U., and R. Witte, "Fuzzy Extensions for Reverse Engineering Repository Models", Proceedings of the 10th Working Conference on Reverse Engineering (WCRE 2003), Victoria, BC, Canada : IEEE, pp. 113–122, November 13–16, 2003. Abstract  Download: Koelsch_Witte-WCRE2003.pdf (318.89 KB)
Kouznetsov, A., B. Shoebottom, R. Witte, and C. J. O. Baker, "Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support", OWL: Experiences and Directions (OWLED 2010), San Francisco, California, USA, June 21–22, 2010. Abstract  Download: owled2010_submission_11.pdf (333.95 KB)
Krestel, R., R. Witte, and S. Bergler, "Fuzzy Set Theory-Based Belief Processing for Natural Language Texts", Proceedings of the Twenty-Second AAAI Conference on Artificial Intelligence (AAAI), Vancouver, British Columbia, Canada : AAAI Press, pp. 1878–1879, July 22–26, 2007. Abstract  Download: fuzzyBeliever-AAAI2007.pdf (79.96 KB); fuzzybeliever-aaai2007.png (205.48 KB)
Kobti, Z., and D. Wu (Eds.), Krestel, R., R. Witte, and S. Bergler, "Creating a Fuzzy Believer to Model Human Newspaper Readers", Proceedings of the 20th Canadian Conference on Artificial Intelligence (Canadian A.I. 2007), vol. 4509, Montréal, Québec, Canada : Springer, pp. 489–501, May 28–30, 2007. Abstract  Download: fuzzy_believer_CAI2007.pdf (181.98 KB)
Krestel, R., R. Witte, and S. Bergler, "Believe It or Not: Solving the TAC 2009 Textual Entailment Tasks through an Artificial Believer System", Proceedings of the Second Text Analysis Conference (TAC 2009), Gaithersburg, Maryland, USA : National Institute of Standards and Technology (NIST), November 16–17, 2009. Abstract  Download: ssl.proceedings.pdf (189.84 KB)
Krestel, R., S. Bergler, and R. Witte, "Modeling human newspaper readers: The Fuzzy Believer approach", Natural Language Engineering, vol. 20, no. 02, pp. 261–288, April 2014. Abstract  Download: nle_fuzzy_believer.pdf (313.8 KB)
Krestel, R., R. Witte, and S. Bergler, "Predicate-Argument EXtractor (PAX)", New Challenges for NLP Frameworks, Valletta, Malta : ELRA, pp. 51--54, May 22, 2010. Abstract  Download: lrec2010-pax.pdf (405.72 KB)
Krestel, R., S. Bergler, and R. Witte, "A Belief Revision Approach to Textual Entailment Recognition", Proceedings of the First Text Analysis Conference (TAC 2008), Gaithersburg, Maryland, USA : National Institute of Standards and Technology (NIST), November 17--19, 2008.  Download: IPD.proceedings.pdf (298.31 KB)
Krestel, R., S. Bergler, and R. Witte, "Minding the Source: Automatic Tagging of Reported Speech in Newspaper Articles", Proceedings of the Sixth International Language Resources and Evaluation Conference (LREC 2008), Marrakech, Morocco : European Language Resources Association (ELRA), May 28–30, 2008. Abstract  Download: 718_paper.pdf (275.68 KB)
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Lockemann, P. C., and R. Witte, "Agents and Databases: Friends or Foes?", Ninth International Database Engineering and Applications Symposium (IDEAS 2005), Montréal, Québec, Canada, pp. 137–147, July 25–27, 2005. Abstract  Download: lockemann_witte_ideas2005.pdf (119.25 KB)
Löffler, F., B. Sateli, B. König-Ries, and R. Witte, "Semantic Content Processing in Web Portals", 4th Canadian Semantic Web Symposium (CSWS 2013), vol. 1054, Montréal, QC, Canada : CEUR-WS.org, pp. 50–51, 07/2013. Abstract  Download: paper-12.pdf (217.15 KB)
Specht, G., H. Gamper, and F. Klan (Eds.), Löffler, F., B. Sateli, R. Witte, and B. König-Ries, "Towards Semantic Recommendation of Biodiversity Datasets based on Linked Open Data", The 26th GI-Workshop on Foundations of Databases (Grundlagen von Datenbanken), vol. 1313, Bozen, Italy : CEUR-WS.org, pp. 65–70, 10/2014. Abstract  Download: Loeffler_GvDB2014.pdf (1.68 MB)
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Meng, W. J., J. Rilling, Y. Zhang, R. Witte, and P. Charland, "An Ontological Software Comprehension Process Model", 3rd International Workshop on Metamodels, Schemas, Grammars, and Ontologies for Reverse Engineering (ATEM 2006), Genoa, Italy, October 1st, 2006. Abstract  Download: Meng_etal-ATEM2006.pdf (567.3 KB)
Meng, W. J., J. Rilling, Y. Zhang, R. Witte, S. Mudur, and P. Charland, "A Context-Driven Software Comprehension Process Model", Second International IEEE Workshop on Software Evolvability (SE 2006), Philadelphia, PA, USA : IEEE, pp. 50–57, September 24, 2006. Abstract  Download: Meng_etal-SE2006.pdf (253.97 KB)
Meurs, M. - J., C. Murphy, I. Morgenstern, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "Semantic text mining support for lignocellulose research", BMC Medical Informatics and Decision Making, vol. 12, no. Suppl 1, pp. S5, 04/2012. Abstract  Download: BMCMIDM2012-1472-6947-12-S1-S5.pdf (1.38 MB)
Meurs, M. - J., C. Murphy, N. Naderi, I. Morgenstern, C. Cantu, S. Semarjit, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "Towards Evaluating the Impact of Semantic Support for Curating the Fungus Scientific Literature", The 3rd Canadian Semantic Web Symposium (CSWS2011) , vol. 774 , Vancouver, British Columbia, Canada , 08/2011. Abstract  Download: mushmancsws2011.pdf (267.44 KB)
Ananiadou, S., D. Lee, S. Navathe, and M. Song (Eds.), Meurs, M. - J., C. Murphy, I. Morgenstern, N. Naderi, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "Semantic Text Mining for Lignocellulose Research", The ACM Fifth International Workshop on Data and Text Mining in Biomedical Informatics in conjunction with CIKM, Glasgow, UK : ACM New York, NY, USA ©2011, 10/2011. Abstract  Download: dtmbio2011_talk.pdf (1.22 MB); dtmbio2011_authorsversion.pdf (667.39 KB)
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Naderi, N., and R. Witte, "Ontology-Based Extraction and Summarization of Protein Mutation Impact Information", Proceedings of the 2010 Workshop on Biomedical Natural Language Processing (BioNLP 2010), Uppsala, Sweden : Association for Computational Linguistics (ACL), pp. 128--129, July 15, 2010. Abstract  Download: W10-1917.pdf (112.96 KB); bionlp2010_poster.png (716.85 KB)
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Perera, P., and R. Witte, "A Self-Learning Context-Aware Lemmatizer for German", Proceedings of Human Language Technology Conference and Conference on Empirical Methods in Natural Language Processing (HLT/EMNLP 2005), Vancouver, British Columbia, Canada : Association for Computational Linguistics (ACL), pp. 636–643, October 6–8, 2005. Abstract  Download: H05-1080.pdf (208.95 KB)
R
Rashwan, A., O. Ormandjieva, and R. Witte, "Ontology-Based Classification of Non-Functional Requirements in Software Specifications: A new Corpus and SVM-Based Classifier", The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 381–386, 07/2013. Abstract  Download: reqsem-compsac13-IEEE.pdf (214.73 KB)
Rebholz-Schuhmann, D., A. Jimeno-Yepes, C. Li, S. Kafkas, I. Lewin, N. Kang, P. Corbett, D. Milward, E. Buyko, E. Beisswanger, et al., "Assessment of NER solutions against the first and second CALBC silver standard corpus", Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, vol. 714, Cambridge, United Kingdom, 10/2010.  Download: Paper08_RebholzSchuhmann.pdf (162.5 KB)
Rilling, J., R. Witte, D. Gasevic, and J. Z. Pan, "Semantic Technologies in System Maintenance", The 16th IEEE International Conference on Program Comprehension (ICPC 2008), Amsterdam, The Netherlands : IEEE, pp. 279--282, June, 2008. Abstract  Download: stsm-icpc2008.pdf (335.16 KB)
Rilling, J., P. Charland, and R. Witte, Traceability in Software Engineering – Past, Present and Future, , no. TR-74-211, CASCON 2007 Workshop : IBM Technical Report, October 25, 2007. Abstract  Download: cascon07_TR-74-211.pdf (46.8 KB)
Rilling, J., R. Witte, P. Schuegerl, and P. Charland, "Beyond Information Silos – An Omnipresent Approach to Software Evolution", International Journal of Semantic Computing (IJSC), vol. 2, no. 4, pp. 431--468, December, 2008.  Download: Rilling_et_al-IJSC2008.pdf (3.45 MB)
Rilling, J., R. Witte, and Y. Zhang, "Automatic Traceability Recovery: An Ontological Approach", International Symposium on Grand Challenges in Traceability (GCT'07), Lexington, Kentucky, USA : Center of Excellence in Traceability, March 22–23, 2007. Abstract