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Semantic Software Lab
Concordia University
Montréal, Canada

Publications from the Semantic Software Lab

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Book
Book Chapter
Baker, C. J. O., and K. - H. Cheung (Eds.), Witte, R., T. Kappler, and C. J. O. Baker, "Ontology Design for Biomedical Text Mining", Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, New York, NY, USA : Springer Science+Business Media, pp. 281–313, 2007. Abstract  Download: ontology_design_preprint.pdf (811.59 KB)
Conference Paper
Witte, R., and B. Sateli, "Adding Natural Language Processing Support to your (Semantic) MediaWiki", The 9th Semantic MediaWiki Conference (SMWCon Spring 2014), Montreal, Canada, 05/2014.  Download: wiki-nlp-tutorial-smwcon2014.pdf (3.1 MB)
Lockemann, P. C., and R. Witte, "Agents and Databases: Friends or Foes?", Ninth International Database Engineering and Applications Symposium (IDEAS 2005), Montréal, Québec, Canada, pp. 137–147, July 25–27, 2005. Abstract  Download: lockemann_witte_ideas2005.pdf (119.25 KB)
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "An Approach to Controlling User Models and Personalization Effects in Recommender Systems", International Conference on Intelligent User Interfaces (IUI '13), Santa Monica, CA, USA : ACM, pp. 49–56, 03/2013. Abstract  Download: iui13.pdf (420.74 KB)
Rebholz-Schuhmann, D., A. Jimeno-Yepes, C. Li, S. Kafkas, I. Lewin, N. Kang, P. Corbett, D. Milward, E. Buyko, E. Beisswanger, et al., "Assessment of NER solutions against the first and second CALBC silver standard corpus", Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, vol. 714, Cambridge, United Kingdom, 10/2010.  Download: Paper08_RebholzSchuhmann.pdf (162.5 KB)
Qu, Y., J. Shanahan, and J. Wiebe (Eds.), Bergler, S., M. Doandes, C. Gerard, and R. Witte, "Attributions", Exploring Attitude and Affect in Text: Theories and Applications, Stanford, California, USA : AAAI Press, pp. 16–19, March 22–25, 2004. Abstract  Download: SS04-07-004.pdf (46.85 KB)
Sateli, B., and R. Witte, "Automatic Construction of a Semantic Knowledge Base from CEUR Workshop Proceedings", The 12th Extended Semantic Web Conference (The Semantic Publishing Challenge 2015), vol. 548, Portoroz, Slovenia : Springer, pp. 129–141, 06/2015. Abstract  Download: sempub2015_poster.pdf (1.52 MB); sempub_challenge2015.pdf (903.62 KB)
Rilling, J., R. Witte, and Y. Zhang, "Automatic Traceability Recovery: An Ontological Approach", International Symposium on Grand Challenges in Traceability (GCT'07), Lexington, Kentucky, USA : Center of Excellence in Traceability, March 22–23, 2007. Abstract
Sack, H., S. Dietze, A. Tordai, and C. Lange (Eds.), Sateli, B., and R. Witte, "An Automatic Workflow for Formalization of Scholarly Articles' Structural and Semantic Elements", The 13th Extended Semantic Web Conference (The Semantic Publishing Challenge 2016), vol. 641, Heraklion, Crete, Greece : Springer International Publishing, pp. 309–320, 06/2016. Abstract  Download: sempub_challenge2016_extended.pdf (668.56 KB)
Krestel, R., S. Bergler, and R. Witte, "A Belief Revision Approach to Textual Entailment Recognition", Proceedings of the First Text Analysis Conference (TAC 2008), Gaithersburg, Maryland, USA : National Institute of Standards and Technology (NIST), November 17--19, 2008.  Download: IPD.proceedings.pdf (298.31 KB)
Krestel, R., R. Witte, and S. Bergler, "Believe It or Not: Solving the TAC 2009 Textual Entailment Tasks through an Artificial Believer System", Proceedings of the Second Text Analysis Conference (TAC 2009), Gaithersburg, Maryland, USA : National Institute of Standards and Technology (NIST), November 16–17, 2009. Abstract  Download: ssl.proceedings.pdf (189.84 KB)
Sateli, B., E. Angius, S. S. Rajivelu, and R. Witte, "Can Text Mining Assistants Help to Improve Requirements Specifications?", Mining Unstructured Data (MUD 2012), Kingston, Ontario, Canada, October 17, 2012. Abstract  Download: mud2012-ReqWiki.pdf (375.44 KB)
Sateli, B., and R. Witte, "Collaborative Semantic Management and Automated Analysis of Scientific Literature", The 11th Extended Semantic Web Conference (ESWC 2014), vol. 8798, Anissaras, Crete, Greece : Springer, pp. 494-498, 05/2014. Abstract  Download: zeeva-eswc14.pdf (311.49 KB)
Witte, R., and C. J. O. Baker, "Combining Biological Databases and Text Mining to support New Bioinformatics Applications", Natural Language Processing and Information Systems: 10th International Conference on Applications of Natural Language to Information Systems (NLDB 2005), vol. 3513, Alicante, Spain : Springer-Verlag, pp. 310–321, June 15–17, 2005. Abstract  Download: witte_baker_nldb05.pdf (360.06 KB)
Witte, R., and T. Gitzinger, "Connecting Wikis and Natural Language Processing Systems", WikiSym '07: Proceedings of the 2007 International Symposium on Wikis, Montréal, Canada : ACM, pp. 165–176, October 21--23, 2007. Abstract
Kobti, Z., and D. Wu (Eds.), Krestel, R., R. Witte, and S. Bergler, "Creating a Fuzzy Believer to Model Human Newspaper Readers", Proceedings of the 20th Canadian Conference on Artificial Intelligence (Canadian A.I. 2007), vol. 4509, Montréal, Québec, Canada : Springer, pp. 489–501, May 28–30, 2007. Abstract  Download: fuzzy_believer_CAI2007.pdf (181.98 KB)
Baker, C. J. O., A. Shaban-Nejad, R. Witte, V. Haarslev, and G. Butler, "Empowering the Enzyme Biotechnologist with Ontologies", 10th International Congress on Biotechnology in the Pulp and Paper Industry (ICBPPI 2007), Monona Terrace, Madison, Wisconsin, USA, June 10–14, 2007. Abstract  Download: ICBPPI2007-poster.png (570.97 KB)
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "Empowering web portal users with personalized text mining services", NETTAB 2012, vol. 18 (Supplement B), Como, Italy : EMBnet.journal, pp. 81--83, 11/2012. Abstract  Download: 558-3133-2-PB.pdf (426.25 KB); Bakalov_NETTAB2012poster.pdf (927.73 KB)
Gitzinger, T., and R. Witte, "Enhancing the OpenOffice.org Word Processor with Natural Language Processing Capabilities", Natural Language Processing resources, algorithms and tools for authoring aids, Marrakech, Morocco, June 1, 2008. Abstract  Download: ooassist.pdf (545.53 KB)
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004. Abstract  Download: baker_witte_cccb04.pdf (272.1 KB)
Witte, R., N. Khamis, and J. Rilling, "Flexible Ontology Population from Text: The OwlExporter", International Conference on Language Resources and Evaluation (LREC), Valletta, Malta : ELRA, pp. 3845--3850, May 19--21, 2010. Abstract  Download: lrec2010-owlexporterV2.pdf (477.58 KB)
Sateli, B., and R. Witte, "From Papers to Triples: An Open Source Workflow for Semantic Publishing Experiments", Semantics, Analytics, Visualisation: Enhancing Scholarly Data (SAVE-SD 2016), Montréal, QC, Canada : Springer, 04/2016. Abstract  Download: savesd16-demo.pdf (908.21 KB)
Baker, C. J. O., R. Witte, A. Shaban-Nejad, G. Butler, and V. Haarslev, "The FungalWeb Ontology: Application Scenarios", Eighth Annual Bio-Ontologies Meeting, Detroit, Michigan, USA, pp. 1–2, June 24, 2005. Abstract  Download: Baker-etal-8th-Bio-Ontologies-Abstract.pdf (30.2 KB)
Witte, R., "Fuzzy Belief Revision", 9th International Workshop on Non-Monotonic Reasoning (NMR 2002), Toulouse, France, pp. 311–320, April 19–21, 2002. Abstract  Download: witte_fuzzybeliefrevision.pdf (131.43 KB)
Kobti, Z., and D. Wu (Eds.), Witte, R., and S. Bergler, "Fuzzy Clustering for Topic Analysis and Summarization of Document Collections", Proceedings of the 20th Canadian Conference on Artificial Intelligence (Canadian A.I. 2007), vol. 4509, Montréal, Québec, Canada : Springer, pp. 476–488, May 28–30, 2007. Abstract  Download: fuzzy_clustering_CAI2007.pdf (375.22 KB)
Krestel, R., R. Witte, and S. Bergler, "Fuzzy Set Theory-Based Belief Processing for Natural Language Texts", Proceedings of the Twenty-Second AAAI Conference on Artificial Intelligence (AAAI), Vancouver, British Columbia, Canada : AAAI Press, pp. 1878–1879, July 22–26, 2007. Abstract  Download: fuzzyBeliever-AAAI2007.pdf (79.96 KB); fuzzybeliever-aaai2007.png (205.48 KB)
Khamis, N., R. Witte, and J. Rilling, "Generating an NLP Corpus from Java Source Code: The SSL Javadoc Doclet", New Challenges for NLP Frameworks, Valletta, Malta : ELRA, pp. 41–45, May 22, 2010. Abstract  Download: nlpf2010-ssldoclet.pdf (436.13 KB)
Butz, C., and P. Lingras (Eds.), Witte, R., B. Sateli, N. Khamis, and J. Rilling, "Intelligent Software Development Environments: Integrating Natural Language Processing with the Eclipse Platform", 24th Canadian Conference on Artificial Intelligence (Canadian AI 2011), vol. 6657, St. John's, Newfoundland and Labrador, Canada : Springer-Verlag, pp. 408–419, May 25–27, 2011. Abstract  Download: cai11-saeclipse.pdf (429.57 KB)
Sateli, B., M. - J. Meurs, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "IntelliGenWiki: An Intelligent Semantic Wiki for Life Sciences", NETTAB 2012, vol. 18 (Supplement B), Como, Italy : EMBnet.journal, pp. 50–52, 11/2012. Abstract  Download: 547-3128-2-PB.pdf (295.06 KB)
Kouznetsov, A., B. Shoebottom, R. Witte, and C. J. O. Baker, "Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support", OWL: Experiences and Directions (OWLED 2010), San Francisco, California, USA, June 21–22, 2010. Abstract  Download: owled2010_submission_11.pdf (333.95 KB)
Krestel, R., S. Bergler, and R. Witte, "Minding the Source: Automatic Tagging of Reported Speech in Newspaper Articles", Proceedings of the Sixth International Language Resources and Evaluation Conference (LREC 2008), Marrakech, Morocco : European Language Resources Association (ELRA), May 28–30, 2008. Abstract  Download: 718_paper.pdf (275.68 KB)
Baker, C. J. O., and R. Witte, "Mutation Miner", 13th Annual International conference on Intelligent Systems for Molecular Biology (ISMB 2005), Detroit, Michigan, USA, June 25–29, 2005. Abstract  Download: ISMB2005-poster.png (411.18 KB)
Baker, C. J. O., R. Witte, A. B. Gurpur, and V. Ryzhikov, "Mutation Miner", 5th International Conference of the Canadian Proteomics Initiative (CPI 2005), Toronto, Ontario, Canada, May 13–14, 2005. Abstract  Download: CPI2005-poster.png (397.65 KB)
Baker, C. J. O., and R. Witte, "Mutation Miner – Textual Annotation of Protein Structures", 5th CERMM Annual Symposium, Concordia University, Montréal, Québec, Canada : Centre for Research in Molecular Modeling, pp. 29, February 11–13, 2005. Abstract  Download: cermm-abstracts-2005.pdf (564.91 KB)
Sateli, B., and R. Witte, "Natural Language Processing for MediaWiki: The Semantic Assistants Approach", The 8th International Symposium on Wikis and Open Collaboration (WikiSym 2012), Linz, Austria : ACM, 08/2012. Abstract  Download: wikinlp-wikisym12.pdf (970.04 KB)
Bakalov, F., B. Sateli, R. Witte, M. - J. Meurs, and B. König-Ries, "Natural Language Processing for Semantic Assistance in Web Portals", IEEE International Conference on Semantic Computing (ICSC 2012), Palermo, Italy : IEEE, 09/2012 . Abstract  Download: Bakalov_ICSC2012.pdf (726.36 KB)
Witte, R., and S. Bergler, "Next-Generation Summarization: Contrastive, Focused, and Update Summaries", International Conference on Recent Advances in Natural Language Processing (RANLP 2007), Borovets, Bulgaria, September 27–29, 2007. Abstract  Download: 157_witte.pdf (280.98 KB)
Rashwan, A., O. Ormandjieva, and R. Witte, "Ontology-Based Classification of Non-Functional Requirements in Software Specifications: A new Corpus and SVM-Based Classifier", The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 381–386, 07/2013. Abstract  Download: reqsem-compsac13-IEEE.pdf (214.73 KB)
Naderi, N., and R. Witte, "Ontology-Based Extraction and Summarization of Protein Mutation Impact Information", Proceedings of the 2010 Workshop on Biomedical Natural Language Processing (BioNLP 2010), Uppsala, Sweden : Association for Computational Linguistics (ACL), pp. 128--129, July 15, 2010. Abstract  Download: W10-1917.pdf (112.96 KB); bionlp2010_poster.png (716.85 KB)
Angius, E., and R. Witte, "OpenTrace: an Open Source Workbench for Automatic Software Traceability Link Recovery", 19th Working Conference on Reverse Engineering (WCRE 2012), Kingston, Ontario, Canada : IEEE Computer Society, pp. 507–508, October 15-18, 2012. Abstract  Download: WCRE2012-OpenTrace.pdf (227.65 KB)
Gracia, J., F. Bond, J. P. McCrae, P. Buitelaar, and C. Chiarcos (Eds.), Sateli, B., and R. Witte, "Personal Research Agents on the Web of Linked Open Data", Language, Data and Knowledge 2017 (LDK 2017), vol. 10318, Galway, Ireland : Springer International Publishing, pp. 10--25, 05/2017.  Download: ldk17.pdf (2.04 MB)
Sateli, B., and R. Witte, "Personal Research Assistants for Young Researchers", Writing Analytics Literacy – Bridging from Research to Practice (LAK 17), Vancouver, BC, Canada, 03/2017.  Download: lak17_abstract.pdf (87.79 KB)
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "Personalized Semantic Assistance for the Curation of Biochemical Literature", IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), Philadelphia, PA, USA : IEEE, 10/2012. Abstract  Download: Bakalov_BIBM2012.pdf (348.96 KB)
Krestel, R., R. Witte, and S. Bergler, "Predicate-Argument EXtractor (PAX)", New Challenges for NLP Frameworks, Valletta, Malta : ELRA, pp. 51--54, May 22, 2010. Abstract  Download: lrec2010-pax.pdf (405.72 KB)
Sateli, B., E. Angius, and R. Witte, "The ReqWiki Approach for Collaborative Software Requirements Engineering with Integrated Text Analysis Support", The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 405–414, 07/2013. Abstract  Download: reqwiki-compsac13.pdf (565.64 KB)
Sateli, B., S. S. Rajivelu, E. Angius, and R. Witte, "ReqWiki: A Semantic System for Collaborative Software Requirements Engineering", The 8th International Symposium on Wikis and Open Collaboration (WikiSym 2012), Linz, Austria : ACM, 08/2012. Abstract  Download: reqwiki-poster.jpg (1.45 MB); reqwiki-paper.pdf (245.58 KB)
Perera, P., and R. Witte, "A Self-Learning Context-Aware Lemmatizer for German", Proceedings of Human Language Technology Conference and Conference on Empirical Methods in Natural Language Processing (HLT/EMNLP 2005), Vancouver, British Columbia, Canada : Association for Computational Linguistics (ACL), pp. 636–643, October 6–8, 2005. Abstract  Download: H05-1080.pdf (208.95 KB)