MutationFinder is a freely available resource for tagging mutations in biomedical texts. However, it cannot be directly integrated into a text mining pipeline when using the General Architecture for Text Engineering (GATE) framework. Here, I show how to make it available to GATE users using the standard TaggerFramework component, which requires some text wrangling.

I've created a new mailing list for people interested in discussing the combination of Software Engineering (SE) and Natural Language Processing (NLP): SENLP.