Text Mining
Ontology Design for Biomedical Text Mining
Submitted by witte on Fri, 2010-12-31 08:53
"Ontology Design for Biomedical Text Mining",
Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, New York, NY, USA, Springer Science+Business Media, pp. 281–313, 2007.
{Mutation mining–A prospector's tale}
Submitted by witte on Wed, 2010-12-29 12:22
"{Mutation mining–A prospector's tale}",
Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006.
Enhanced semantic access to the protein engineering literature using ontologies populated by text mining
Submitted by witte on Wed, 2010-12-29 11:33
"Enhanced semantic access to the protein engineering literature using ontologies populated by text mining",
Int.\ J.\ Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, pp. 389–413, 2007.
{Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature}
Submitted by rene on Tue, 2010-08-24 09:48
"{Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature}",
The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004.
{An Ontology-based Approach for the Recovery of Traceability Links}
Submitted by rene on Fri, 2010-08-13 07:33
"{An Ontology-based Approach for the Recovery of Traceability Links}",
3rd International Workshop on Metamodels, Schemas, Grammars, and Ontologies for Reverse Engineering (ATEM 2006), Genoa, Italy, October 1st, 2006.
{A Unified Ontology-Based Process Model for Software Maintenance and Comprehension}
Submitted by rene on Wed, 2010-08-11 08:03
"{A Unified Ontology-Based Process Model for Software Maintenance and Comprehension}",
Models in Software Engineering: Workshops and Symposia at MoDELS 2006, Genoa, Italy, October 1-6, 2006, Reports and Revised Selected Papers, vol. 4364, Genoa, Italy, Springer Berlin/Heidelberg, pp. 56–65, 2007.
{Empowering Software Maintainers with Semantic Web Technologies}
Submitted by rene on Fri, 2010-08-06 07:27
"{Empowering Software Maintainers with Semantic Web Technologies}",
4th European Semantic Web Conference (ESWC 2007), no. 4519, Innsbruck, Austria, Springer-Verlag Berlin Heidelberg, pp. 37–52, June 3–7, 2007.
{Converting a Historical Architecture Encyclopedia into a Semantic Knowledge Base}
Submitted by rene on Mon, 2010-07-26 08:36
"{Converting a Historical Architecture Encyclopedia into a Semantic Knowledge Base}",
IEEE Intelligent Systems, vol. 25, no. 1, Los Alamitos, CA, USA, IEEE Computer Society, pp. 58--66, January/February, 2010.
Running MutationFinder in GATE using the TaggerFramework PR
Submitted by rene on Sat, 2010-07-24 13:46
MutationFinder is a freely available resource for tagging mutations in biomedical texts. However, it cannot be directly integrated into a text mining pipeline when using the General Architecture for Text Engineering (GATE) framework. Here, I show how to make it available to GATE users using the standard TaggerFramework component, which requires some text wrangling.
