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Semantic Software Lab
Concordia University
Montréal, Canada

Publications from the Semantic Software Lab

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Personal Research Agent
Sateli, B., A Personal Research Agent for Semantic Knowledge Management of Scientific Literature, , Ph.D. Computer Science, Montreal : Concordia University, 02/2018.
Personal Research Agents
Sateli, B., and R. Witte, "Personal Research Assistants for Young Researchers", Writing Analytics Literacy – Bridging from Research to Practice (LAK 17), Vancouver, BC, Canada, 03/2017.  Download: lak17_abstract.pdf (87.79 KB)
Gracia, J., F. Bond, J. P. McCrae, P. Buitelaar, and C. Chiarcos (Eds.), Sateli, B., and R. Witte, "Personal Research Agents on the Web of Linked Open Data", Language, Data and Knowledge 2017 (LDK 2017), vol. 10318, Galway, Ireland : Springer International Publishing, pp. 10--25, 05/2017.  Download: ldk17.pdf (2.04 MB)
personalization
Bakalov, F., M. - J. Meurs, B. König-Ries, B. Sateli, R. Witte, G. Butler, and A. Tsang, "An Approach to Controlling User Models and Personalization Effects in Recommender Systems", International Conference on Intelligent User Interfaces (IUI '13), Santa Monica, CA, USA : ACM, pp. 49–56, 03/2013. Abstract  Download: iui13.pdf (420.74 KB)
process modeling
Meng, W. J., J. Rilling, Y. Zhang, R. Witte, S. Mudur, and P. Charland, "A Context-Driven Software Comprehension Process Model", Second International IEEE Workshop on Software Evolvability (SE 2006), Philadelphia, PA, USA : IEEE, pp. 50–57, September 24, 2006. Abstract  Download: Meng_etal-SE2006.pdf (253.97 KB)
Meng, W. J., J. Rilling, Y. Zhang, R. Witte, and P. Charland, "An Ontological Software Comprehension Process Model", 3rd International Workshop on Metamodels, Schemas, Grammars, and Ontologies for Reverse Engineering (ATEM 2006), Genoa, Italy, October 1st, 2006. Abstract  Download: Meng_etal-ATEM2006.pdf (567.3 KB)
Rilling, J., Y. Zhang, W. J. Meng, R. Witte, V. Haarslev, and P. Charland, "A Unified Ontology-Based Process Model for Software Maintenance and Comprehension", Models in Software Engineering: Workshops and Symposia at MoDELS 2006, Genoa, Italy, October 1-6, 2006, Reports and Revised Selected Papers, vol. 4364, Genoa, Italy : Springer Berlin/Heidelberg, pp. 56–65, 2007. Abstract  Download: Rilling_etal-MoDELS2006.pdf (253.17 KB)
program comprehension
Zhang, Y., R. Witte, J. Rilling, and V. Haarslev, "Ontology-based Program Comprehension Tool Supporting Website Architectural Evolution", Eighth IEEE International Symposium on Web Site Evolution (WSE 2006), Philadelphia, PA, USA : IEEE, pp. 41–49, September 23–24, 2006. Abstract  Download: Zhang_etal-WSE2006.pdf (307.26 KB)
Meng, W. J., J. Rilling, Y. Zhang, R. Witte, S. Mudur, and P. Charland, "A Context-Driven Software Comprehension Process Model", Second International IEEE Workshop on Software Evolvability (SE 2006), Philadelphia, PA, USA : IEEE, pp. 50–57, September 24, 2006. Abstract  Download: Meng_etal-SE2006.pdf (253.97 KB)
Meng, W. J., J. Rilling, Y. Zhang, R. Witte, and P. Charland, "An Ontological Software Comprehension Process Model", 3rd International Workshop on Metamodels, Schemas, Grammars, and Ontologies for Reverse Engineering (ATEM 2006), Genoa, Italy, October 1st, 2006. Abstract  Download: Meng_etal-ATEM2006.pdf (567.3 KB)
ProSAT
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004. Abstract  Download: baker_witte_cccb04.pdf (272.1 KB)
Protein Function
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004. Abstract  Download: baker_witte_cccb04.pdf (272.1 KB)
Protein mutation
Baker, C. J. O., and R. Witte, "Mutation mining–A prospector's tale", Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006. Abstract
protein mutations
Witte, R., T. Kappler, and C. J. O. Baker, "Enhanced semantic access to the protein engineering literature using ontologies populated by text mining", Int.\ J.\ Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, pp. 389–413, 2007. Abstract  Download: witte_etal_ijbra2007.pdf (376.3 KB)
Protein Structure Annotation
Baker, C. J. O., and R. Witte, "Mutation mining–A prospector's tale", Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006. Abstract
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004. Abstract  Download: baker_witte_cccb04.pdf (272.1 KB)
Provenance
Taylor, K. L., R. S. Gonçalves, F. Lécué, and J. Yan (Eds.), Löffler, F., V. Wesp, S. Babalou, P. Kahn, R. Lachmann, B. Sateli, R. Witte, and B. König-Ries, "ScholarLensViz: A Visualization Framework for Transparency in Semantic User Profiles", Proceedings of the ISWC 2020 Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 19th International Semantic Web Conference (ISWC 2020), Globally online, November 1-6, 2020 (UTC), vol. 2721, [Online] : CEUR-WS.org, pp. 20–25, 11/2020. Abstract  Download: paper485.pdf (1.03 MB)