Publications from the Semantic Software Lab
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"Proceedings of the 4th Canadian Semantic Web Symposium (CSWS 2013)",
4th Canadian Semantic Web Symposium (CSWS 2013), vol. 1054, Montréal, QC, Canada : CEUR-WS.org, 06/2011, 2013.
Download: CSWS2013-complete.pdf (7.49 MB)
"Proceedings of the European Conference on Computational Biology (ECCB) 2010 Workshop: Annotation, interpretation and management of mutations (AIMM)",
ECCB 2010 Workshop: Annotation interpretation and management of mutations (AIMM), BMC Bioinformatics, vol. 12 Suppl 4, 2011.
"Algorithms and semantic infrastructure for mutation impact extraction and grounding",
BMC Genomics, vol. 11, no. Suppl 4, pp. S24, 12/2010.
Abstract
Download: 1471-2164-11-S4-S24.pdf (1.19 MB)
"Assessing the quality factors found in in-line documentation written in natural language: The JavadocMiner",
Data & Knowledge Engineering, vol. 87, pp. 19–40, 03/2013.
Abstract
Download: dke-javadocminer.pdf (985.31 KB)
"Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.",
Journal of biomedical semantics, vol. 2 Suppl 5, pp. S11, 2011.
Abstract
Download: 2041-1480-2-S5-S11.pdf (647.11 KB)
"Automated extraction and semantic analysis of mutation impacts from the biomedical literature",
BMC Genomics, vol. 13, no. Suppl 4, pp. S10, 06/2012.
Abstract
Download: 1471-2164-13-S4-S10.pdf (1.96 MB)
"Beyond Information Silos – An Omnipresent Approach to Software Evolution",
International Journal of Semantic Computing (IJSC), vol. 2, no. 4, pp. 431--468, December, 2008.
Download: Rilling_et_al-IJSC2008.pdf (3.45 MB)
"Converting a Historical Architecture Encyclopedia into a Semantic Knowledge Base",
IEEE Intelligent Systems, vol. 25, no. 1, Los Alamitos, CA, USA : IEEE Computer Society, pp. 58--66, January/February, 2010.
Abstract
Download: ieee-is-durm.pdf (1.61 MB)
"Enhanced semantic access to the protein engineering literature using ontologies populated by text mining",
Int.\ J.\ Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, pp. 389–413, 2007.
Abstract
Download: witte_etal_ijbra2007.pdf (376.3 KB)
"Modeling human newspaper readers: The Fuzzy Believer approach",
Natural Language Engineering, vol. 20, no. 02, pp. 261–288, April 2014.
Abstract
Download: nle_fuzzy_believer.pdf (313.8 KB)
"Mutation mining–A prospector's tale",
Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006.
Abstract
"Ontological Approach for the Semantic Recovery of Traceability Links between Software Artifacts",
IET Software, vol. 2, no. 3, pp. 185--203, June, 2008.
Abstract
Download: ietsoft2008-traceability.pdf (553.69 KB)
"OrganismTagger: Detection, normalization, and grounding of organism entities in biomedical documents",
Bioinformatics, vol. 27, no. 19 Oxford University Press, pp. 2721--2729, August 9, 2011.
Abstract
Download: Bioinformatics-2011-Naderi-2721-9.pdf (424.64 KB)
"ScholarLens: extracting competences from research publications for the automatic generation of semantic user profiles",
PeerJ Computer Science, vol. 3, pp. e121, 07/2017.
"Semantic representation of scientific literature: bringing claims, contributions and named entities onto the Linked Open Data cloud",
PeerJ Computer Science, vol. 1, no. e37 PeerJ, 12/2015.
Abstract
Download: peerj-cs-37.pdf (8.69 MB)
"Semantic text mining support for lignocellulose research",
BMC Medical Informatics and Decision Making, vol. 12, no. Suppl 1, pp. S5, 04/2012.
Abstract
Download: BMCMIDM2012-1472-6947-12-S1-S5.pdf (1.38 MB)
"Story Driven Approach to Software Evolution",
IET Software, vol. 2, no. 4, pp. 304--320, August, 2008.
Abstract
Download: ietsoft2008-story.pdf (1.15 MB)
"Text Mining and Software Engineering: an Integrated Source Code and Document Analysis Approach",
IET Software, vol. 2, no. 1 IET, pp. 3–16, 2008.
Abstract
Download: witte_etal_iet2008.pdf (1.5 MB)
"Towards A Systematic Evaluation of Protein Mutation Extraction Systems",
Journal of Bioinformatics and Computational Biology (JBCB), vol. 5, no. 6, pp. 1339–1359, December, 2007.
Abstract
Download: witte_baker_jbcb2007.pdf (248.69 KB)
Text Mining: Wissensgewinnung aus natürlichsprachigen Dokumenten,
Universität Karlsruhe, Fakultät für Informatik, Institut für Programmstrukturen und Datenorganisation (IPD), 2006.
Abstract
Download: TextMining-Bericht2006.pdf (2.37 MB)
Traceability in Software Engineering – Past, Present and Future,
, no. TR-74-211, CASCON 2007 Workshop : IBM Technical Report, October 25, 2007.
Abstract
Download: cascon07_TR-74-211.pdf (46.8 KB)
"Assessing The Quality Factors Found in In-Line Documentation Written in Natural Language: The JavadocMiner",
Department of Computer Science and Software Engineering, Master of Applied Science (Software Engineering), Montréal, Quebec : Concordia University, 04/2011.
Abstract
Download: JavadocMiner.pdf (2.46 MB)
"Automated Extraction of Protein Mutation Impacts from the Biomedical Literature",
Department of Computer Science and Software Engineering, M. Comp. Sc., Montreal : Concordia University, 09/2011.
Abstract
Download: Naderi_MSc_F2011.pdf (3.33 MB)
"Automated Quality Assurance of Non-Functional Requirements for Testability",
Department of Computer Science and Software Engineering Concordia University, 30 April, 2015.
Abstract
Automatic Analysis and Reasoning on Reported Speech in Newspaper Articles,
, Karlsruhe, Germany : Universität Karlsruhe (TH), Fakultät für Informatik, Institut für Programmstrukturen und Datenorganisation (IPD), 2007.
Download: believer.pdf (1.27 MB)
"A General Architecture to Enhance Wiki Systems with Natural Language Processing Techniques",
Department of Computer Science and Software Engineering, M.Sc. Software Engineering, Montreal : Concordia University, 04/2012.
Abstract
Download: BaharSateli_MASc.pdf (3.93 MB)
A Personal Research Agent for Semantic Knowledge Management of Scientific Literature,
, Ph.D. Computer Science, Montreal : Concordia University, 02/2018.
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