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OWLExporterDemo

Submitted by Mysran on Thu, 2016-03-03 06:22
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Hello,

I am facing problem working with the tool. I tried replacing the text in demo.txt and got the below error. Please advise on this.

Regards,
Mysran

java.util.NoSuchElementException
at java.util.HashMap$HashIterator.nextNode(Unknown Source)
at java.util.HashMap$ValueIterator.next(Unknown Source)
at gate.annotation.AnnotationSetImpl$AnnotationSetIterator.next(AnnotationSetImpl.java:220)
at gate.annotation.AnnotationSetImpl$AnnotationSetIterator.next(AnnotationSetImpl.java:205)
at mention_map_domain_nlp_relation.Domain_appearsIn_Sentence(file:/D:/Research/KM/Concept_Maps/Ontology/Software/gate-8.1-build5169-BIN/plugins/OwlExporter/gate/application-resources/grammars/mention_map_domain_nlp_relation.jape:37)
at gate.jape.RightHandSide.transduce(RightHandSide.java:344)
at gate.jape.SinglePhaseTransducer.fireRule(SinglePhaseTransducer.java:690)
at gate.jape.SinglePhaseTransducer.transduce(SinglePhaseTransducer.java:354)
at gate.jape.MultiPhaseTransducer.transduce(MultiPhaseTransducer.java:188)
at gate.jape.Batch.transduce(Batch.java:204)
at gate.creole.Transducer.execute(Transducer.java:166)
at gate.util.Benchmark.executeWithBenchmarking(Benchmark.java:291)
at gate.creole.SerialController.runComponent(SerialController.java:225)
at gate.creole.SerialController.executeImpl(SerialController.java:157)
at gate.creole.SerialAnalyserController.executeImpl(SerialAnalyserController.java:223)
at gate.creole.SerialAnalyserController.execute(SerialAnalyserController.java:126)
at gate.util.Benchmark.executeWithBenchmarking(Benchmark.java:291)
at gate.gui.SerialControllerEditor$RunAction$1.run(SerialControllerEditor.java:1728)
at java.lang.Thread.run(Unknown Source)

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rene's picture

Please see existing answer

Submitted by rene on Thu, 2016-03-03 07:19.

Hi,

This is the same issue as discussed in this question: http://www.semanticsoftware.info/forum/nosuchelementexception-when-runni...

Best, René

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OWLExporterDemo

Submitted by Mysran on Thu, 2016-03-03 07:57.

Hello,

Thanks for the reply. I have few queries on the comment made in the provided thread. I am copying that below...

"the reason is that the demo pipeline is *very* minimal, we only included resources and (hard-coded) rules to handle the short demo text. It shows you how the annotations need to be set up for OWL export, but for a real application pipeline, you'd need more sophisticated PRs (e.g., a parser for relation detection) or JAPE grammars."

Q1. By meaning "demo pipeline is *very* minimal", do you mean domain.owl which defines about a particular domain(like person, organisation and location)? If yes, what I am using as text in demo.txt is also similar, but still gets the error.

Q2. Please advise on the hard-coded rules. Where are these rules defined? I searched the folder OwlExporter\gate\application-resources\grammars for "Nick", "Montreal" but didn't find anything.

Q3. Please advice how to accomplish this(you'd need more sophisticated PRs).

Thank you once again for the reply.

Regards,
Mysran

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rene's picture

Please check the GATE User's Guide and Training Material

Submitted by rene on Sun, 2016-03-13 19:31.

Hello,

Your questions are mostly about how to use GATE, which is out of the scope of this forum. I recommend you check out the GATE User's Guide and Training Course material.

Specifically,

  • Q1: The export rules were specifically written for the demo text, to show how to setup correct mapping annotations for the OWL export process, as described in the OwlExporter User's Guide.
  • Q2: As with any other GATE pipeline, the best way to view it is to open it in the GATE Developer GUI. You can find the rules in the "Jape Main" Transducer.
  • Q3: This is entirely dependent on your application domain. OwlExporter is meant for the use case of exporting the results from an existing pipeline to an existing ontology. If you lack either, you will need to refer to the literature on ontology design or text mining pipeline development.

Regards, René

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