Publications from the Semantic Software Lab
"Semantic Search for Biological Datasets: A Usability Study on Modes of Querying and Explaining Search Results",
BTW 2023 Gesellschaft für Informatik e.V., 2023.
Abstract
"ScholarLensViz: A Visualization Framework for Transparency in Semantic User Profiles",
Proceedings of the ISWC 2020 Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 19th International Semantic Web Conference (ISWC 2020), Globally online, November 1-6, 2020 (UTC), vol. 2721, [Online] : CEUR-WS.org, pp. 20–25, 11/2020.
Abstract
Download: paper485.pdf (1.03 MB)
"The LODeXporter: Flexible Generation of Linked Open Data Triples from NLP Frameworks for Automatic Knowledge Base Construction",
Proceedings of the Eleventh International Conference on Language Resources and Evaluation (LREC 2018), Miyazaki, Japan : European Language Resources Association (ELRA), pp. 2423-2428, May 7-12, 2018.
Abstract
Download: lodexporter-lrec2018.pdf (234.03 KB)
A Personal Research Agent for Semantic Knowledge Management of Scientific Literature,
, Ph.D. Computer Science, Montreal : Concordia University, 02/2018.
"ScholarLens: extracting competences from research publications for the automatic generation of semantic user profiles",
PeerJ Computer Science, vol. 3, pp. e121, 07/2017.
"Personal Research Agents on the Web of Linked Open Data",
Language, Data and Knowledge 2017 (LDK 2017), vol. 10318, Galway, Ireland : Springer International Publishing, pp. 10--25, 05/2017.
Download: ldk17.pdf (2.04 MB)
"Personal Research Assistants for Young Researchers",
Writing Analytics Literacy – Bridging from Research to Practice (LAK 17), Vancouver, BC, Canada, 03/2017.
Download: lak17_abstract.pdf (87.79 KB)
"An Automatic Workflow for Formalization of Scholarly Articles' Structural and Semantic Elements",
The 13th Extended Semantic Web Conference (The Semantic Publishing Challenge 2016), vol. 641, Heraklion, Crete, Greece : Springer International Publishing, pp. 309–320, 06/2016.
Abstract
Download: sempub_challenge2016_extended.pdf (668.56 KB)
"From Papers to Triples: An Open Source Workflow for Semantic Publishing Experiments",
Semantics, Analytics, Visualisation: Enhancing Scholarly Data (SAVE-SD 2016), Montréal, QC, Canada : Springer, 04/2016.
Abstract
Download: savesd16-demo.pdf (908.21 KB)
"Semantic User Profiles: Learning Scholars' Competences by Analyzing their Publications",
Semantics, Analytics, Visualisation: Enhancing Scholarly Data (SAVE-SD 2016), vol. 9792, Montreal, QC, Canada : Springer International Publishing, 04/2016.
Abstract
Download: savesd16.pdf (481.69 KB)
"Automated Quality Assurance of Non-Functional Requirements for Testability",
Department of Computer Science and Software Engineering Concordia University, 30 April, 2015.
Abstract
"Semantic representation of scientific literature: bringing claims, contributions and named entities onto the Linked Open Data cloud",
PeerJ Computer Science, vol. 1, no. e37 PeerJ, 12/2015.
Abstract
Download: peerj-cs-37.pdf (8.69 MB)
"Automatic Construction of a Semantic Knowledge Base from CEUR Workshop Proceedings",
The 12th Extended Semantic Web Conference (The Semantic Publishing Challenge 2015), vol. 548, Portoroz, Slovenia : Springer, pp. 129–141, 06/2015.
Abstract
Download: sempub2015_poster.pdf (1.52 MB); sempub_challenge2015.pdf (903.62 KB)
"What's in this paper? Combining Rhetorical Entities with Linked Open Data for Semantic Literature Querying",
Semantics, Analytics, Visualisation: Enhancing Scholarly Data (SAVE-SD 2015), Florence, Italy : ACM, pp. 1023–1028, 05/2015.
Abstract
"Modeling human newspaper readers: The Fuzzy Believer approach",
Natural Language Engineering, vol. 20, no. 02, pp. 261–288, April 2014.
Abstract
Download: nle_fuzzy_believer.pdf (313.8 KB)
"Towards Semantic Recommendation of Biodiversity Datasets based on Linked Open Data",
The 26th GI-Workshop on Foundations of Databases (Grundlagen von Datenbanken), vol. 1313, Bozen, Italy : CEUR-WS.org, pp. 65–70, 10/2014.
Abstract
Download: Loeffler_GvDB2014.pdf (1.68 MB)
"Adding Natural Language Processing Support to your (Semantic) MediaWiki",
The 9th Semantic MediaWiki Conference (SMWCon Spring 2014), Montreal, Canada, 05/2014.
Download: wiki-nlp-tutorial-smwcon2014.pdf (3.1 MB)
"Collaborative Semantic Management and Automated Analysis of Scientific Literature",
The 11th Extended Semantic Web Conference (ESWC 2014), vol. 8798, Anissaras, Crete, Greece : Springer, pp. 494-498, 05/2014.
Abstract
Download: zeeva-eswc14.pdf (311.49 KB)
"Semantic MediaWiki (SMW) for Scientific Literature Management",
The 9th Semantic MediaWiki Conference (SMWCon Spring 2014), Montréal, Canada, 05/2014.
Abstract
Download: zeeva-smwcon14-talk.pdf (1.07 MB)
"Supporting Researchers with a Semantic Literature Management Wiki",
The 4th Workshop on Semantic Publishing (SePublica 2014), vol. 1155, Anissaras, Crete, Greece : CEUR-WS.org, 05/2014.
Abstract
Download: zeeva-sepublica14.pdf (700.77 KB)
"Semantic Management of Scholarly Literature: A Wiki-based Approach",
The 27th Canadian Conference on Artificial Intelligence (Canadian AI 2014), vol. LNCS 8436, Montréal, Canada : Springer, pp. 387–392, 04/2014.
Download: zeeva-cai14.pdf (359.45 KB)
"TagCurate: crowdsourcing the verification of biomedical annotations to mobile users",
NETTAB 2013 workshop focused on Semantic, Social, and Mobile Applications for Bioinformatics and Biomedical Laboratories, vol. 19 Suppl. B, Venice Lido, Italy : EMBnet.journal, pp. 24–26, 10/2013.
Abstract
Download: 722-4297-1-PB.pdf (190.8 KB); nettab2013-tagcurate-slides.pdf (1.01 MB)
"Smarter Mobile Apps through Integrated Natural Language Processing Services",
The 10th International Conference on Mobile Web Information Systems (MobiWIS 2013), vol. 8093, Paphos, Cyprus : Springer Berlin Heidelberg, pp. 187–202, 08/2013.
Abstract
Download: mobiwis13_android.pdf (660.5 KB)
"Ontology-Based Classification of Non-Functional Requirements in Software Specifications: A new Corpus and SVM-Based Classifier",
The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 381–386, 07/2013.
Abstract
Download: reqsem-compsac13-IEEE.pdf (214.73 KB)
"The ReqWiki Approach for Collaborative Software Requirements Engineering with Integrated Text Analysis Support",
The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 405–414, 07/2013.
Abstract
Download: reqwiki-compsac13.pdf (565.64 KB)
"Semantic Content Processing in Web Portals",
4th Canadian Semantic Web Symposium (CSWS 2013), vol. 1054, Montréal, QC, Canada : CEUR-WS.org, pp. 50–51, 07/2013.
Abstract
Download: paper-12.pdf (217.15 KB)
"Proceedings of the 4th Canadian Semantic Web Symposium (CSWS 2013)",
4th Canadian Semantic Web Symposium (CSWS 2013), vol. 1054, Montréal, QC, Canada : CEUR-WS.org, 06/2011, 2013.
Download: CSWS2013-complete.pdf (7.49 MB)
"An Approach to Controlling User Models and Personalization Effects in Recommender Systems",
International Conference on Intelligent User Interfaces (IUI '13), Santa Monica, CA, USA : ACM, pp. 49–56, 03/2013.
Abstract
Download: iui13.pdf (420.74 KB)
"Assessing the quality factors found in in-line documentation written in natural language: The JavadocMiner",
Data & Knowledge Engineering, vol. 87, pp. 19–40, 03/2013.
Abstract
Download: dke-javadocminer.pdf (985.31 KB)
"Smarter Wikis through Integrated Natural Language Processing Assistants",
Semantic MediaWiki Conference (SMWCon) Spring 2013, New York City, NY, USA, 03/2013.
Abstract
Download: smwcon13_talk.pdf (1.3 MB)
"Can Text Mining Assistants Help to Improve Requirements Specifications?",
Mining Unstructured Data (MUD 2012), Kingston, Ontario, Canada, October 17, 2012.
Abstract
Download: mud2012-ReqWiki.pdf (375.44 KB)
"OpenTrace: an Open Source Workbench for Automatic Software Traceability Link Recovery",
19th Working Conference on Reverse Engineering (WCRE 2012), Kingston, Ontario, Canada : IEEE Computer Society, pp. 507–508, October 15-18, 2012.
Abstract
Download: WCRE2012-OpenTrace.pdf (227.65 KB)
"Empowering web portal users with personalized text mining services",
NETTAB 2012, vol. 18 (Supplement B), Como, Italy : EMBnet.journal, pp. 81--83, 11/2012.
Abstract
Download: 558-3133-2-PB.pdf (426.25 KB); Bakalov_NETTAB2012poster.pdf (927.73 KB)
"IntelliGenWiki: An Intelligent Semantic Wiki for Life Sciences",
NETTAB 2012, vol. 18 (Supplement B), Como, Italy : EMBnet.journal, pp. 50–52, 11/2012.
Abstract
Download: 547-3128-2-PB.pdf (295.06 KB)
"Personalized Semantic Assistance for the Curation of Biochemical Literature",
IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), Philadelphia, PA, USA : IEEE, 10/2012.
Abstract
Download: Bakalov_BIBM2012.pdf (348.96 KB)
"Natural Language Processing for Semantic Assistance in Web Portals",
IEEE International Conference on Semantic Computing (ICSC 2012), Palermo, Italy : IEEE, 09/2012 .
Abstract
Download: Bakalov_ICSC2012.pdf (726.36 KB)
"Natural Language Processing for MediaWiki: The Semantic Assistants Approach",
The 8th International Symposium on Wikis and Open Collaboration (WikiSym 2012), Linz, Austria : ACM, 08/2012.
Abstract
Download: wikinlp-wikisym12.pdf (970.04 KB)
"ReqWiki: A Semantic System for Collaborative Software Requirements Engineering",
The 8th International Symposium on Wikis and Open Collaboration (WikiSym 2012), Linz, Austria : ACM, 08/2012.
Abstract
Download: reqwiki-poster.jpg (1.45 MB); reqwiki-paper.pdf (245.58 KB)
"Supporting Wiki Users with Natural Language Processing",
The 8th International Symposium on Wikis and Open Collaboration (WikiSym 2012), Linz, Austria : ACM, 08/2012.
Abstract
Download: wikinlp-demo.pdf (363.11 KB)
"Automated extraction and semantic analysis of mutation impacts from the biomedical literature",
BMC Genomics, vol. 13, no. Suppl 4, pp. S10, 06/2012.
Abstract
Download: 1471-2164-13-S4-S10.pdf (1.96 MB)
"mycoMINE : un système de fouille de texte sémantique dédié à la recherche de biocarburants de seconde génération",
80ème Congrès de l'ACFAS, Montréal, QC, Canada, 05/2012.
Abstract
Download: acfas2012_poster.jpg (1.92 MB)
"A General Architecture to Enhance Wiki Systems with Natural Language Processing Techniques",
Department of Computer Science and Software Engineering, M.Sc. Software Engineering, Montreal : Concordia University, 04/2012.
Abstract
Download: BaharSateli_MASc.pdf (3.93 MB)
"Semantic text mining support for lignocellulose research",
BMC Medical Informatics and Decision Making, vol. 12, no. Suppl 1, pp. S5, 04/2012.
Abstract
Download: BMCMIDM2012-1472-6947-12-S1-S5.pdf (1.38 MB)
"Text Mining Assistants in Wikis for Biocuration",
5th International Biocuration Conference, Washington DC, USA : International Society for Biocuration, pp. 126, 04/2012.
Abstract
Download: biocuration2012poster.png (1.22 MB)
Mutation Impact Analysis System: Automated Extraction of Protein Mutation Impacts from the Biomedical Literature,
LAP LAMBERT Academic Publishing, pp. 1-224, 2012.
Abstract
"Intelligent Software Development Environments: Integrating Natural Language Processing with the Eclipse Platform",
24th Canadian Conference on Artificial Intelligence (Canadian AI 2011), vol. 6657, St. John's, Newfoundland and Labrador, Canada : Springer-Verlag, pp. 408–419, May 25–27, 2011.
Abstract
Download: cai11-saeclipse.pdf (429.57 KB)
"OrganismTagger: Detection, normalization, and grounding of organism entities in biomedical documents",
Bioinformatics, vol. 27, no. 19 Oxford University Press, pp. 2721--2729, August 9, 2011.
Abstract
Download: Bioinformatics-2011-Naderi-2721-9.pdf (424.64 KB)
"Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.",
Journal of biomedical semantics, vol. 2 Suppl 5, pp. S11, 2011.
Abstract
Download: 2041-1480-2-S5-S11.pdf (647.11 KB)
"Text Analytics with Eclipse for Software Engineers",
CASCON 2011, Toronto/Markham, ON, Canada, 11/2011.
Abstract
"Semantic Text Mining for Lignocellulose Research",
The ACM Fifth International Workshop on Data and Text Mining in Biomedical Informatics in conjunction with CIKM, Glasgow, UK : ACM New York, NY, USA ©2011, 10/2011.
Abstract
Download: dtmbio2011_talk.pdf (1.22 MB); dtmbio2011_authorsversion.pdf (667.39 KB)