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Semantic Software Lab
Concordia University
Montréal, Canada
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Ontology

Ontology-Based Classification of Non-Functional Requirements in Software Specifications: A new Corpus and SVM-Based Classifier

Submitted by rene on Fri, 2013-07-26 21:24
Rashwan, A., O. Ormandjieva, and R. Witte, "Ontology-Based Classification of Non-Functional Requirements in Software Specifications: A new Corpus and SVM-Based Classifier", The 37th Annual International Computer Software & Applications Conference (COMPSAC 2013), Kyoto, Japan : IEEE, pp. 381–386, 07/2013.
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Mutation Impact Analysis System: Automated Extraction of Protein Mutation Impacts from the Biomedical Literature

Submitted by nona on Thu, 2012-07-05 07:29
Naderi, N., Mutation Impact Analysis System: Automated Extraction of Protein Mutation Impacts from the Biomedical Literature, LAP LAMBERT Academic Publishing, pp. 1-224, 2012.
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Automated extraction and semantic analysis of mutation impacts from the biomedical literature

Submitted by nona on Mon, 2012-06-18 06:40
Naderi, N., and R. Witte, "Automated extraction and semantic analysis of mutation impacts from the biomedical literature", BMC Genomics, vol. 13, no. Suppl 4, pp. S10, 06/2012.
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OwlExporter v3.0 Released


We just released a new version of the OwlExporter ontology population plugin for GATE. The OwlExporter PR can be added to any NLP pipeline to facilitate the population of an existing OWL ontology with entities detected in the corpus. It supports the population of separate NLP- and domain-ontologies and has support for some advanced features, like the export of coreference chains.

In this release, we included a pre-compiled binary and a complete example pipeline that transforms GATE's ANNIE information extraction example into an ontology population system. We also completely revamped the documentation and website to make it more accessible to ontology population novices.

» READ MORE
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Automated Extraction of Protein Mutation Impacts from the Biomedical Literature

Submitted by nona on Sun, 2011-09-18 07:45
Naderi, N., "Automated Extraction of Protein Mutation Impacts from the Biomedical Literature", Department of Computer Science and Software Engineering, M. Comp. Sc., Montreal : Concordia University, 09/2011.
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Flexible Ontology Population from Text: The OwlExporter

Submitted by ninus on Wed, 2011-03-16 14:12
Witte, R., N. Khamis, and J. Rilling, "Flexible Ontology Population from Text: The OwlExporter", International Conference on Language Resources and Evaluation (LREC), Valletta, Malta : ELRA, pp. 3845--3850, May 19--21, 2010.
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Empowering the Enzyme Biotechnologist with Ontologies

Submitted by witte on Sat, 2011-01-01 08:59
Baker, C. J. O., A. Shaban-Nejad, R. Witte, V. Haarslev, and G. Butler, "Empowering the Enzyme Biotechnologist with Ontologies", 10th International Congress on Biotechnology in the Pulp and Paper Industry (ICBPPI 2007), Monona Terrace, Madison, Wisconsin, USA, June 10–14, 2007.
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Ontology Design for Biomedical Text Mining

Submitted by witte on Fri, 2010-12-31 08:53
Baker, C. J. O., and K. - H. Cheung (Eds.), Witte, R., T. Kappler, and C. J. O. Baker, "Ontology Design for Biomedical Text Mining", Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, New York, NY, USA : Springer Science+Business Media, pp. 281–313, 2007.
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Text Mining and Software Engineering: an Integrated Source Code and Document Analysis Approach

Submitted by witte on Wed, 2010-12-29 11:45
Witte, R., Q. Li, Y. Zhang, and J. Rilling, "Text Mining and Software Engineering: an Integrated Source Code and Document Analysis Approach", IET Software, vol. 2, no. 1 IET, pp. 3–16, 2008.
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Enhanced semantic access to the protein engineering literature using ontologies populated by text mining

Submitted by witte on Wed, 2010-12-29 11:33
Witte, R., T. Kappler, and C. J. O. Baker, "Enhanced semantic access to the protein engineering literature using ontologies populated by text mining", Int.\ J.\ Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, pp. 389–413, 2007.
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