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Semantic Software Lab
Concordia University
Montréal, Canada

Publications from the Semantic Software Lab

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Filters: Author is Nona Naderi  [Clear All Filters]
2012
Naderi, N., and R. Witte, "Automated extraction and semantic analysis of mutation impacts from the biomedical literature", BMC Genomics, vol. 13, no. Suppl 4, pp. S10, 06/2012. Abstract  Download: 1471-2164-13-S4-S10.pdf (1.96 MB)
Naderi, N., Mutation Impact Analysis System: Automated Extraction of Protein Mutation Impacts from the Biomedical Literature, LAP LAMBERT Academic Publishing, pp. 1-224, 2012. Abstract
2011
Naderi, N., T. Kappler, C. J. O. Baker, and R. Witte, "OrganismTagger: Detection, normalization, and grounding of organism entities in biomedical documents", Bioinformatics, vol. 27, no. 19 Oxford University Press, pp. 2721--2729, August 9, 2011. Abstract  Download: Bioinformatics-2011-Naderi-2721-9.pdf (424.64 KB)
Ananiadou, S., D. Lee, S. Navathe, and M. Song (Eds.), Meurs, M. - J., C. Murphy, I. Morgenstern, N. Naderi, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "Semantic Text Mining for Lignocellulose Research", The ACM Fifth International Workshop on Data and Text Mining in Biomedical Informatics in conjunction with CIKM, Glasgow, UK : ACM New York, NY, USA ©2011, 10/2011. Abstract  Download: dtmbio2011_talk.pdf (1.22 MB); dtmbio2011_authorsversion.pdf (667.39 KB)
Naderi, N., "Automated Extraction of Protein Mutation Impacts from the Biomedical Literature", Department of Computer Science and Software Engineering, M. Comp. Sc., Montreal : Concordia University, 09/2011. Abstract  Download: Naderi_MSc_F2011.pdf (3.33 MB)
Meurs, M. - J., C. Murphy, N. Naderi, I. Morgenstern, C. Cantu, S. Semarjit, G. Butler, J. Powlowski, A. Tsang, and R. Witte, "Towards Evaluating the Impact of Semantic Support for Curating the Fungus Scientific Literature", The 3rd Canadian Semantic Web Symposium (CSWS2011) , vol. 774 , Vancouver, British Columbia, Canada , 08/2011. Abstract  Download: mushmancsws2011.pdf (267.44 KB)
2010
Naderi, N., and R. Witte, "Ontology-Based Extraction and Summarization of Protein Mutation Impact Information", Proceedings of the 2010 Workshop on Biomedical Natural Language Processing (BioNLP 2010), Uppsala, Sweden : Association for Computational Linguistics (ACL), pp. 128--129, July 15, 2010. Abstract  Download: W10-1917.pdf (112.96 KB); bionlp2010_poster.png (716.85 KB)
Laurila, J., N. Naderi, R. Witte, A. Riazanov, A. Kouznetsov, and C. Baker, "Algorithms and semantic infrastructure for mutation impact extraction and grounding", BMC Genomics, vol. 11, no. Suppl 4, pp. S24, 12/2010. Abstract  Download: 1471-2164-11-S4-S24.pdf (1.19 MB)