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Bioinformatics

Mutation Miner

Submitted by witte on Sat, 2011-01-01 10:07
Baker, C. J. O., and R. Witte, "Mutation Miner", 13th Annual International conference on Intelligent Systems for Molecular Biology (ISMB 2005), Detroit, Michigan, USA, June 25–29, 2005.
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Empowering the Enzyme Biotechnologist with Ontologies

Submitted by witte on Sat, 2011-01-01 09:59
Baker, C. J. O., A. Shaban-Nejad, R. Witte, V. Haarslev, and G. Butler, "Empowering the Enzyme Biotechnologist with Ontologies", 10th International Congress on Biotechnology in the Pulp and Paper Industry (ICBPPI 2007), Monona Terrace, Madison, Wisconsin, USA, June 10–14, 2007.
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Ontology Design for Biomedical Text Mining

Submitted by witte on Fri, 2010-12-31 09:53
Baker, C. J. O., and K. - H. Cheung (Eds.), Witte, R., T. Kappler, and C. J. O. Baker, "Ontology Design for Biomedical Text Mining", Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, New York, NY, USA : Springer Science+Business Media, pp. 281–313, 2007.
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Mutation mining–A prospector's tale

Submitted by witte on Wed, 2010-12-29 13:22
Baker, C. J. O., and R. Witte, "Mutation mining–A prospector's tale", Information Systems Frontiers (ISF), vol. 8, no. 1, pp. 47–57, February, 2006.
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Towards A Systematic Evaluation of Protein Mutation Extraction Systems

Submitted by witte on Wed, 2010-12-29 12:59
Witte, R., and C. J. O. Baker, "Towards A Systematic Evaluation of Protein Mutation Extraction Systems", Journal of Bioinformatics and Computational Biology (JBCB), vol. 5, no. 6, pp. 1339–1359, December, 2007.
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Enhanced semantic access to the protein engineering literature using ontologies populated by text mining

Submitted by witte on Wed, 2010-12-29 12:33
Witte, R., T. Kappler, and C. J. O. Baker, "Enhanced semantic access to the protein engineering literature using ontologies populated by text mining", Int.\ J.\ Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, pp. 389–413, 2007.
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Algorithms and semantic infrastructure for mutation impact extraction and grounding

Submitted by rene on Mon, 2010-12-27 10:57
Laurila, J., N. Naderi, R. Witte, A. Riazanov, A. Kouznetsov, and C. Baker, "Algorithms and semantic infrastructure for mutation impact extraction and grounding", BMC Genomics, vol. 11, no. Suppl 4, pp. S24, 12/2010.
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Annotation, Interpretation and Management of Mutations (AIMM 2010)

Submitted by rene on Fri, 2010-10-15 08:14
Baker, C. J. O., R. Witte, and D. Rebholz-Schuhmann (Eds.), Annotation, Interpretation and Management of Mutations (AIMM 2010), , vol. 645, Ghent, Belgium, 09/2010.
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Assessment of NER solutions against the first and second CALBC silver standard corpus

Submitted by rene on Sun, 2010-10-10 03:00
Rebholz-Schuhmann, D., A. Jimeno-Yepes, C. Li, S. Kafkas, I. Lewin, N. Kang, P. Corbett, D. Milward, E. Buyko, E. Beisswanger, et al., "Assessment of NER solutions against the first and second CALBC silver standard corpus", Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, vol. 714, Cambridge, United Kingdom, 10/2010.
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Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature

Submitted by rene on Tue, 2010-08-24 10:48
Baker, C. J. O., and R. Witte, "Enriching Protein Structure Visualizations with Mutation Annotations Obtained by Text Mining Protein Engineering Literature", The 3rd Canadian Working Conference on Computational Biology (CCCB'04), Markham, Ontario, Canada, October 4, 2004.
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